Journal Articles
- Tang Z*, Bai Y*, Fang Q*, ..., Liu S#, Peng S#, Kuang M# . Spatial Transcriptomics Reveals Tryptophan Metabolism Restricting Maturation of Intratumoral Tertiary Lymphoid Structures. Cancer Cell. 2025 (Corresponding author)
- Qiu X*, Zhu D*, Yao J*, ..., Xu Xun #, Liu S#, Bai Y#. Spatiotemporal modeling of molecular holograms. Cell. 2024 （Corresponding author）
- Hao S*, Zhu X*, Huang Z*, ..., Liu L#, Liu S#, Sun Y#, Liu C#. Cross-species single-cell spatial transcriptomic atlases of the cerebellar cortex. Science, 2024 (Corresponding author)
- Ying Lei, Xian Liang, Yunong Sun, Ting Yao, ..., Shiping Liu#, Zhi Zhang#, Tiemin Liu#. Region-specific transcriptomic responses to obesity and diabetes in macaque hypothalamus. Cell Metabolism, Volume 36, Issue 2, 2024, Pages 438-453.e6, ISSN 1550-4131. (Corresponding author)
- Qin, Pengfei, Huaxian Chen, Yuhang Wang, Liang Wu, ..., Shiping Liu#, Hongcheng Lin#. Cancer-Associated Fibroblasts Undergoing Neoadjuvant Chemotherapy Suppress Rectal Cancer Revealed by Single-Cell and Spatial Transcriptomics. Cell Reports Medicine 4, no. 10 (October 2023): 101231. (Corresponding author)
- Liang Wu, Jiayan Yan, Yinqi Bai, Feiyu Chen, ..., Shiping Liu#, ..., Jian Zhou#. An Invasive Zone in Human Liver Cancer Identified by Stereo-Seq Promotes Hepatocyte–Tumor Cell Crosstalk, Local Immunosuppression and Tumor Progression. Cell Research, June 19, 2023. (Corresponding author)
- Lei Y*, Cheng M*, Li Z*, ..., Liu S#, Xu X#. Spatially resolved gene regulatory and disease-related vulnerability map of the adult Macaque cortex. Nat Commun. 2022;13(1):6747. （Corresponding author）
- Wu L*, Jiang M, Wang Y, ..., Liu S#. scDPN for High-throughput Single-cell CNV Detection to Uncover Clonal Evolution During HCC Recurrence. Genomics Proteomics Bioinformatics. 2021;19.（Corresponding author）
- Sun Y-F*, Wu L*, Liu S-P*, Jiang M-M*, et al. Dissecting spatial heterogeneity and the immune-evasion mechanism of CTCs by single-cell RNA-seq in hepatocellular carcinoma. Nat Commun. 2021;12(1):4091. （Co-first author）
- Sun, Y.*, Wu, L.*#, Zhong, Y.*, Zhou, K.*, Hou, Y.*, Wang, Z., ... Liu, S.#, Yang, X.#, Fan, J.# (2020). Single-cell landscape of the ecosystem in early-relapse hepatocellular carcinoma. Cell, 1–18. （Co-first author）
- Wang, W.*, Zhong, Y.*, Zhuang, Z.*, Xie, J.*, Lu, Y.*, Huang, C.*, ... Liu, S.#, Ling, F.#, Yao, X.# (2021). Multiregion single‐cell sequencing reveals the transcriptional landscape of the immune microenvironment of colorectal cancer. Clinical and Translational Medicine, 11(1). （Corresponding author）